Role of the Inflammasome Pathway According to the Expression of Proteins and Genetic Polymorphisms in COVID-19 Patient

dos Santos et al., International Journal of Molecular Sciences, doi:10.3390/ijms26209993, Oct 2025
Post-mortem study of 42 deceased COVID-19 patients in Brazil identifying molecular differences between the first and second pandemic waves that suggest potential therapeutic targets. Patients from the second wave showed significantly increased lung tissue expression of inflammasome-related proteins, most robustly Interleukin-18 (IL-18), as well as TLR-4 and NLRP3. Specific genetic polymorphisms in NFKB1 and NOX4 were linked to higher protein expression in the more severe second wave cases, suggesting these pathways may be valuable targets for future therapies.
dos Santos et al., 14 Oct 2025, retrospective, Brazil, peer-reviewed, 11 authors, study period June 2020 - May 2021. Contact: cleber.souza@pelepequenoprincipe.org.br, cleberius@gmail.com.
Role of the Inflammasome Pathway According to the Expression of Proteins and Genetic Polymorphisms in COVID-19 Patients
Thiago Rodrigues Dos Santos, Lucas Baena Carstens, Leonardo Vinícius Barbosa, Mariana Collete, Natan De Araujo, Caroline Busatta Vaz De Paula, Marina Luise Viola Azevedo, Ana Clara De Almeida, Seigo Nagashima, Lucia De Noronha, Cleber Machado-Souza
International Journal of Molecular Sciences, doi:10.3390/ijms26209993
COVID-19 severity is frequently linked to exacerbated inflammation, with the inflammasome pathway playing a key role in activating inflammatory interleukins. This observational post-mortem study evaluated the expression of inflammasome-associated molecules in patients who died from COVID-19 during the second wave. Minimally invasive autopsies were performed on patients from the first (n = 24) and second (n = 18) waves. Lung tissue samples underwent immunohistochemical staining for ACE-2, TLR-4, NF-κB, TNF-α, NOX4, NLRP3, ASC, CASPASE-1, IL-1β, IL-18, GSDMD, and CASPASE-9. Additionally, genetic polymorphisms within inflammasome-related genes were assessed via real-time polymerase chain reaction. Lung tissue expressions of TLR-4, NLRP3, and IL-18 were significantly higher in patients from the second wave compared to those from the first, with expression levels of 26.3 versus 12.1, 13.9 versus 6.4, and 25.6 versus 3.8, respectively. The A allele at rs4648090 of NFKB1 and the T allele at rs317155 of NOX4 were associated with increased corresponding protein expression by factors of 5.1 and 8.9, respectively. Notably, IL-18 demonstrated substantial immunological relevance, correlating strongly with elevated expression linked to these genetic variants in second wave cases. These findings suggest that the inflammasome pathway harbors biologically meaningful molecules implicated in severe COVID-19, meriting further investigation for their potential as diagnostic or therapeutic targets.
Conflicts of Interest: The authors declare no conflicts of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript; or in the decision to publish the results. Abbreviations The following abbreviations are used in this manuscript: ACE2 Angiotensin-converting enzyme
References
Baas, Taubenberger, Chong, Chui, Katze, SARS-CoV virus-host interactions and comparative etiologies of acute respiratory distress syndrome as determined by transcriptional and cytokine profiling of formalin-fixed paraffin-embedded tissues, J. Interf. Cytokine Res, doi:10.1089/jir.2006.26.309
Barbosa, Prá, Nagashima, Pereira, Stocco et al., Immune Response Gaps Linked to SARS-CoV-2 Infection: Cellular Exhaustion, Senescence, or Both?, Int. J. Mol. Sci, doi:10.3390/ijms232213734
Birra, Benucci, Landolfi, Merchionda, Loi et al., COVID 19: A clue from innate immunity, Immunol. Res, doi:10.1007/s12026-020-09137-5
Carstens, Campos D'amico, Fernandes De Moura, Morais De Castro, Centenaro et al., Lung Inflammasome Activation in SARS-CoV-2 Post-Mortem Biopsies, Int. J. Mol. Sci, doi:10.3390/ijms232113033
Chanock, Candidate genes and single nucleotide polymorphisms (SNPs) in the study of human disease, Dis. Markers, doi:10.1155/2001/858760
Chen, Haigh, Barman, Fulton, From form to function: The role of Nox4 in the cardiovascular system, Front. Physiol, doi:10.3389/fphys.2012.00412
Chen, Wang, Chen, Meng, Regulation of adaptive immunity by the NLRP3 inflammasome, Int. Immunopharmacol, doi:10.1016/j.intimp.2010.11.025
Cheng, Cao, Xu, Meir, Lambeth, Homologs of gp91 phox: Cloning and tissue expression of Nox3, Nox4, and Nox5, Gene, doi:10.1016/s0378-1119(01)00449-8
Ciarambino, Crispino, Minervini, Giordano, COVID-19 and Frailty, Vaccines, doi:10.3390/vaccines11030606
Collete, Dos Santos, De Araújo, Martins, Nagashima et al., Neutrophil Extracellular Trap Markers in Post Mortem Lung Biopsies from COVID-19 Patients, Int. J. Mol. Sci, doi:10.3390/ijms26168059
Corrêa, Midega, Cordioli, Barbas, Rabello Filho et al., Clinical characteristics and outcomes of patients with COVID-19 admitted to the intensive care unit during the first and second waves of the pandemic in Brazil: A single-center retrospective cohort study, Einstein, doi:10.31744/einstein_journal/2023ao0233
Debnath, Banerjee, Berk, Genetic gateways to COVID-19 infection: Implications for risk, severity, and outcomes, FASEB J, doi:10.1096/fj.202001115R
Dessie, Zewotir, Mortality-related risk factors of COVID-19: A systematic review and meta-analysis of 42 studies and 423,117 patients, BMC Infect. Dis, doi:10.1186/s12879-021-06536-3
Fillmore, Bell, Shen, Nguyen, La et al., Disulfiram use is associated with lower risk of COVID-19: A retrospective cohort study, PLoS ONE, doi:10.1371/journal.pone.0259061
Florindo, Kleiner, Vaskovich-Koubi, Acúrcio, Carreira et al., Immune-mediated approaches against COVID-19, Nat. Nanotechnol, doi:10.1038/s41565-020-0732-3
Freitas, Costa, Zimmermann, Gois, Anjos et al., Temporal trends of severity and outcomes of critically ill patients with COVID-19 after the emergence of variants of concern: A comparison of two waves, PLoS ONE, doi:10.1371/journal.pone.0299607
Gintoni, Adamopoulou, Yapijakis, The Impact of ACE and ACE2 Gene Polymorphisms in Pulmonary Diseases including COVID-19, Vivo, doi:10.21873/invivo.12672
Hartmann, Miggiolaro, Motta, Jr, Carstens et al., The Pathogenesis of COVID-19 Myocardial Injury: An Immunohistochemical Study of Postmortem Biopsies, Front. Immunol, doi:10.3389/fimmu.2021.748417
Hedayat, Netea, Rezaei, Targeting of Toll-like receptors: A decade of progress in combating infectious diseases, Lancet Infect. Dis, doi:10.1016/S1473-3099(11)70099-8
Henry, De Oliveira, Benoit, Plebani, Lippi, Hematologic, biochemical and immune biomarker abnormalities associated with severe illness and mortality in coronavirus disease 2019 (COVID-19): A meta-analysis, Clin. Chem. Lab. Med, doi:10.1515/cclm-2020-0369
Hoshino, Kato, Oka, Imaoka, Kinoshita et al., Pulmonary inflammation and emphysema: Role of the cytokines IL-18 and IL-13, Am. J. Respir. Crit. Care Med, doi:10.1164/rccm.200603-316OC
Hu, Liu, Xia, Zhang, Zhang et al., FDA-approved disulfiram inhibits pyroptosis by blocking gasdermin D pore formation, Nat. Immunol, doi:10.1038/s41590-020-0669-6
Iftimie, Lopez-Azcona, Vallverdu, Hernandez-Flix, De Febrer et al., First and second waves of coronavirus disease-19: A comparative study in hospitalized patients in Reus, Spain, PLoS ONE, doi:10.1371/journal.pone.0248029
Kartsonaki, Baillie, Barrio, Baruch, Beane et al., Characteristics and outcomes of an international cohort of 600000 hospitalized patients with COVID-19, Int. J. Epidemiol, doi:10.1093/ije/dyad012
Khreefa, Barbier, Koksal, Love, Del Valle, Pathogenesis and Mechanisms of SARS-CoV-2 Infection in the Intestine, Liver, and Pancreas, Cells, doi:10.3390/cells12020262
Koh, Jang, Hyun, Kim, Prognostic value of Musashi 2 (MSI2) in cancer patients: A systematic review and meta-analysis, Front. Oncol, doi:10.3389/fonc.2022.969632
Kovacs, Miao, Gasdermins, Effectors of Pyroptosis, Trends Cell Biol, doi:10.1016/j.tcb.2017.05.005
Lehrnbecher, Bernig, Hanisch, Koehl, Behl et al., Common genetic variants in the interleukin-6 and chitotriosidase genes are associated with the risk for serious infection in children undergoing therapy for acute myeloid leukemia, Leukemia, doi:10.1038/sj.leu.2403922
Li, Mao, Liu, Song, He et al., Functional variations of the TLR4 gene in association with chronic obstructive pulmonary disease and pulmonary tuberculosis, BMC Pulm. Med, doi:10.1186/s12890-019-0939-y
Lippi, Favaloro, D-dimer is Associated with Severity of Coronavirus Disease 2019: A Pooled Analysis, Thromb. Haemost, doi:10.1055/s-0040-1709650
Liu, Pei, Lai, Guan, Zeyaweiding et al., Association of ACE2 variant rs4646188 with the risks of atrial fibrillation and cardioembolic stroke in Uygur patients with type 2 diabetes, BMC Cardiovasc. Disord, doi:10.1186/s12872-021-01915-9
Liu, Zhang, Joo, Sun, NF-κB signaling in inflammation, Signal Transduct. Target. Ther, doi:10.1038/sigtrans.2017.23
Liu, Zhang, Ruan, Pan, Magupalli et al., Inflammasome-activated gasdermin D causes pyroptosis by forming membrane pores, Nature, doi:10.1038/nature18629
Luo, Liu, Guan, Li, Lai et al., Association of ACE2 genetic polymorphisms with hypertension-related target organ damages in south Xinjiang, Hypertens. Res, doi:10.1038/s41440-018-0166-6
Malaquias, Gadotti, Motta, Jr, Martins et al., The role of the lectin pathway of the complement system in SARS-CoV-2 lung injury, Transl. Res, doi:10.1016/j.trsl.2020.11.008
Markov, Ghafari, Beer, Lythgoe, Simmonds et al., The evolution of SARS-CoV-2, Nat. Rev. Microbiol, doi:10.1038/s41579-023-00878-2
Marshall, The Pulmonary Renin-Angiotensin System, Curr. Pharm. Des, doi:10.2174/1381612033455431
Miggiolaro, Da Silva, Wiedmer, Godoy, Borges et al., COVID-19 and Pulmonary Angiogenesis: The Possible Role of Hypoxia and Hyperinflammation in the Overexpression of Proteins Involved in Alveolar Vascular Dysfunction, Viruses, doi:10.3390/v15030706
Miggiolaro, Motta, Jr, De Paula, Nagashima et al., Covid-19 cytokine storm in pulmonary tissue: Anatomopathological and immunohistochemical findings, Respir. Med. Case Reports, doi:10.1016/j.rmcr.2020.101292
Moura, Cortez-Escalante, Cavalcante, Barreto, Sanchez et al., Evolução temporal e imunização nas três ondas epidemiológicas, Brasil, 2020-2022, Rev. Saude Publica, doi:10.11606/s1518-8787.2022056004907
Murphy, Weaver, Janeway, s Immunobiology
Nagashima, Dutra, Arantes, Zeni, Klein et al., COVID-19 and Lung Mast Cells: The Kallikrein-Kinin Activation Pathway, Int. J. Mol. Sci, doi:10.3390/ijms23031714
Nagashima, Mendes, Martins, Borges, Godoy et al., Endothelial Dysfunction and Thrombosis in Patients With COVID-19-Brief Report, Arterioscler. Thromb. Vasc. Biol, doi:10.1161/ATVBAHA.120.314860
Oakes, Fuchs, Gardner, Lazartigues, Yue, Nicotine and the renin-angiotensin system, Am. J. Physiol.-Regul. Integr. Comp. Physiol, doi:10.1152/ajpregu.00099.2018
Paula, Azevedo, Nagashima, Martins, Malaquias et al., IL-4/IL-13 remodeling pathway of COVID-19 lung injury, Sci. Rep, doi:10.1038/s41598-020-75659-5
Pertovaara, Antonen, Hurme, Th2 cytokine genotypes are associated with a milder form of primary Sjögren's syndrome, Ann. Rheum. Dis, doi:10.1136/ard.2005.040956
Potere, Del Buono, Caricchio, Cremer, Vecchié et al., Interleukin-1 and the NLRP3 inflammasome in COVID-19: Pathogenetic and therapeutic implications: IL-1 and NLRP3 inflammasome in COVID-19, EBioMedicine, doi:10.1016/j.ebiom.2022.104299
Rodrigues, De Sá, Ishimoto, Becerra, Oliveira et al., Inflammasomes are activated in response to SARS-cov-2 infection and are associated with COVID-19 severity in patients, J. Exp. Med, doi:10.1084/jem.20201707
Sagoo, Garcia, Breart, Lemaître, Michonneau et al., In vivo imaging of inflammasome activation reveals a subcapsular macrophage burst response that mobilizes innate and adaptive immunity, Nat. Med, doi:10.1038/nm.4016
Santoro, Rossi, Amici, NF-κB and virus infection: Who controls whom, EMBO J, doi:10.1093/emboj/cdg267
Sefik, Qu, Junqueira, Kaffe, Mirza et al., Inflammasome activation in infected macrophages drives COVID-19 pathology, Nature, doi:10.1038/s41586-022-04802-1
Sharma, Kanneganti, The cell biology of inflammasomes: Mechanisms of inflammasome activation and regulation, J. Cell Biol, doi:10.1083/jcb.201602089
Shi, Zhao, Wang, Shi, Wang et al., Cleavage of GSDMD by inflammatory caspases determines pyroptotic cell death, Nature, doi:10.1038/nature15514
Silva, Ribeiro, Gouveia, Marcelino, Santos et al., Hyperinflammatory Response in COVID-19: A Systematic Review, Viruses, doi:10.3390/v15020553
Singh, Choudhari, Nema, Khan, ACE2 and TMPRSS2 polymorphisms in various diseases with special reference to its impact on COVID-19 disease, Microb. Pathog, doi:10.1016/j.micpath.2020.104621
Tan, Liao, Zhou, Mei, Wong, Targeting the renin-angiotensin system as novel therapeutic strategy for pulmonary diseases, Curr. Opin. Pharmacol, doi:10.1016/j.coph.2017.12.002
Tanaka, Miyazaki, Oashi, Teramoto, Shiratori et al., IL-18 might reflect disease activity in mild and moderate asthma exacerbation, J. Allergy Clin. Immunol, doi:10.1067/mai.2001.112275
Veiga, Cavalcanti, Age, host response, and mortality in COVID-19, Eur. Respir. J, doi:10.1183/13993003.00796-2023
Wlodek, Kirkpatrick, Andrews, Noble, Schroyer et al., A pilot study evaluating GSK1070806 inhibition of interleukin-18 in renal transplant delayed graft function, PLoS ONE, doi:10.1371/journal.pone.0247972
Yder, Su, Ferrall, Hung, Wu, Coronavirus vaccine development: From SARS and MERS to COVID-19, J. Biomed. Sci, doi:10.1186/s12929-020-00695-2
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